PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC023187.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 528aa    MW: 58766.3 Da    PI: 7.2818
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC023187.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA34.82.3e-11127935
          GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                  TplWR+gp  ++ LCnaCG ++r kg+
  EcC023187.10  1 TPLWRNGPPEKPVLCNACGSRWRTKGT 27
                  9*******88888***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.3E-7127IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.28E-5132No hitNo description
SMARTSM004010.0048141IPR000679Zinc finger, GATA-type
CDDcd002024.40E-11141No hitNo description
PfamPF003204.2E-9127IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
TPLWRNGPPE KPVLCNACGS RWRTKGTLAN YTPLHSRADP ENYEDHRVAR TKSMSVNKKK  60
EVKVLKRKYD SENTTVRGNS HEYSQSFHKF ADDDTSNWSS SGSALSNSES CAQFGSADAS  120
DLTGQAQSVV WDSLVPSRKR TCVNRPKPSA VEKLARDLHT ILHEQQSSCL SGSSEEDLLL  180
ESETPMVSVE IGHGSVLIRH PSSIAREEES EASSLSVDNK QLKINDVHSH PLTIPVHNNK  240
CVNLPSSKAQ TLESPFGQGK EQGQLKRDKS QHEKLRMXXX XXXXXXXXXX XDVLNFDQFV  300
KYLTYEEQQQ LLKYLPQVDR ANFPDSLRSM FDGAAFLENL SSFQHLLAEG LFDASLSVAK  360
EEDYKTLRRL VLSDLIKCKW VEHFHQVKKC KGGSVKPSSQ GGRETVSSNL IKGNGLHDIQ  420
KQKYTDVNAK MKSPRRIIMG GSSRNKEIAE SDGSCFSPRS LFAVPPDGGA LLLDSLHVTD  480
DNSEQDLLLD VPSNSSFPQA ELLHPAMSFV SQQASTSSSS LYPQLVYP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055425.10.0PREDICTED: GATA transcription factor 26-like
TrEMBLA0A059C1W40.0A0A059C1W4_EUCGR; Uncharacterized protein
STRINGPOPTR_0003s08080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-106GATA transcription factor 26